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Sanskrit Bagul
Senior Engineer – Bioinformatics
Senior Engineer – Bioinformatics
Sanskrit Bagul is a Senior Bioinformatics Engineer with 8+ years of experience in workflow automation, cloud-based bioinformatics systems, and computational biology. She specializes in deploying and scaling bioinformatics platforms on AWS, migrating pipelines to high-performance computing environments, and building RShiny and JupyterHub-based solutions for genomic data analysis. With experience across research and industry, she integrates automation, cloud architecture, and analytics to deliver reproducible, efficient, and compliant bioinformatics workflows
FORMERLY AT
Clovertex
LOCATION
Hyderabad, India
AVAILABILITY
Full-time
Skills
AlphaFold
AWS
Bioconductor (R)
Bioinformatics Data Analysis
Computational Biology
CryoSPARC
Docker
Functional Genomics Pipelines
Gene Expression Analysis
HPC
JupyterHub
KNIME
ODE Modeling
Omics Data
OpenFold
+7 More
Work Experience
Bioinformatics Engineer
Clovertex
December 2021 – March 2025
- Deployed Posit Workbench, Package Manager, and Connect on AWS ParallelCluster.
- Implemented JupyterHub with Docker and SLURM for scalable HPC workflows.
- Built RShiny web applications for genomic meta-analysis and optimized codebase for performance. Supported genomics pipeline migrations to HPC and automated CryoSPARC analysis workflows.
- Enabled AlphaFold/OpenFold structure modeling on AWS and led Scrum ceremonies
TECHNOLOGIES
AWS, Docker, JupyterHub, SLURM, CryoSPARC, RShiny, AlphaFold, OpenFold, HPC
Senior Research Fellow
CSIR – Institute of Genomics & Integrative Biology, New Delhi
May 2015 – September 2017
- Developed pipelines to analyze lesion and blood samples for Vitiligo studies.
- Performed mutation burden assessment and identified cancer risk markers.
- Conducted computational analysis to study protein roles in disease mechanisms supporting translational research.
TECHNOLOGIES
Functional Genomics Pipelines, R, Bioinformatics Data Analysis
Research Assistant
Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University
November 2013 – December 2014
- Performed gene expression profiling for biomarker discovery. Analyzed multi-omics datasets and correlated genomic and clinical outcomes to identify disease signatures.
TECHNOLOGIES
Bioconductor (R), Gene Expression Analysis, Omics Data
